GPU workstation Galibier (Galibier)

GPU workstation Galibier
CONTACT US

Guarantor: Milan Ešner, Ph.D.
Instrument status: Operational Operational, 9.1.2020 17:18
Research group: CF: Cellular Imaging Core Facility


Detailed description:

Powerful computer workstation with IMARIS, ZEN, FIJI-ImageJ, Cell Profiler.

IMARIS 9.5 Single full license
Measurement Pro - allows user to extract quantitave parameters out of microscopic data. It allows to precisely measure angles and 3D distances of segmented objects.
Imaris Coloc - This module is designed for colocalization analysis, it can quantify spatial overlap between two channels. It provides also set of statistical parameters including Mander’s and Pearson correlation coefficient.
Filament Tracer - This module offers tools for segmentation of filament-like structures such as neurons, dendrites and microtubules. It provides measuring of specialized statistical parameters for neuroscience such as Number of Dendrite Segments, Dendrite Area, Number of Dendrite Branches, Spine Length, Spine Volume, Number of Spines and Scholl Analysis.
Imaris Cell - This module allows to segment cell volume together with nucleus and vesicle volume. The result is a segmented complete-cell structure, which can be further described by statistical parameters such as Nuclear to Cytoplasmatic ratio, Cell volume etc.
Imaris Track Lineage - This module performs automated tracking of 3D objects. Subsequent analysis includes motion and shape analysis of moving objects, including dividing cells.
Imaris XT - Imaris XT enables to integrate additional algorithms for image analysis. It supports MATLAB, Python and Java.
Imaris Vantage - This module enables to visualize quantitave parameters as multidimensional scatterplots and perform statistical tests.
ImarisBatch - allows user to process image series in batch. User defines one set of parameters for all of the series and the module then performs image analysis.
IMARIS File converter - convert .czi or other file formats into .ims file format.

ZEN:
Deconvolution, Point spread function calculation, 3D visualization, FRAP, FRET analysis, spectral unmixing,
colocalisation.
PC parametrs:Intel Xeon Gold 6134 - 8 cores, 3.2 GHz, 128 GB RAM, SSD disk, GPU Nvidia Quadro P6000 24GB - 3840 CUDA cores.