Nikos Darzentas, Ph.D.

Publications that are part of the Web of Science database, possibly also other publications chosen by authors.

2020

• Radtanakatikanon, A; Keller, SM; Darzentas, N; Moore, PF; Folch, G; Ngoune, VN; Lefranc, MP; Vernau, W, 2020: Topology and expressed repertoire of the Felis catus T cell receptor loci. BMC GENOMICS 21(1), doi: 10.1186/s12864-019-6431-5

2019

• Matsuyama, A; Bienzle, D; Richardson, D; Deravi, N; Hwang, MH; Darzentas, N; Keller, SM, 2019: Composite lymphoma of concurrent T zone lymphoma and large cell B cell lymphoma in a dog. BMC VETERINARY RESEARCH 15(1), doi: 10.1186/s12917-019-2154-8
• Grioni, A; Fazio, G; Rigamonti, S; Bystry, V; Daniele, G; Dostalova, Z; Quadri, M; Saitta, C; Silvestri, D; Songia, S; Storlazzi, CT; Biondi, A; Darzentas, N; Cazzaniga, G, 2019: A Simple RNA Target Capture NGS Strategy for Fusion Genes Assessment in the Diagnostics of Pediatric B-cell Acute Lymphoblastic Leukemia. HEMASPHERE 3(3), doi: 10.1097/HS9.0000000000000250
• Muggen, AF; de Jong, M; Wolvers-Tettero, ILM; Kallemeijn, MJ; Teodosio, C; Darzentas, N; Stadhouders, R; Ijspeert, H; van der Burg, M; van Ijcken, WFJ; Verhaar, JAN; Abdulahad, WH; Brouwer, E; Boots, AMH; Hendriks, RW; van Dongen, JJM; Langerak, AW, 2019: The presence of CLL-associated stereotypic B cell receptors in the normal BCR repertoire from healthy individuals increases with age. IMMUNITY & AGEING 16(1), doi: 10.1186/s12979-019-0163-x
• Bruggemann, M; Kotrova, M; Knecht, H; Bartram, J; Boudjogrha, M; Bystry, V; Fazio, G; Fronkova, E; Giraud, M; Grioni, A; Hancock, J; Herrmann, D; Jimenez, C; Krejci, A; Moppett, J; Reigl, T; Salson, M; Scheijen, B; Schwarz, M; Songia, S; Svaton, M; van Dongen, JJM; Villarese, P; Wakeman, S; Wright, G; Cazzaniga, G; Davi, F; Garcia-Sanz, R; Gonzalez, D; Groenen, PJTA; Hummel, M; Macintyre, EA; Stamatopoulos, K; Pott, C; Trka, J; Darzentas, N; Langerak, AW, 2019: Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study. LEUKEMIA 33(9), p. 2241 - 2253, doi: 10.1038/s41375-019-0496-7
• Knecht, H; Reigl, T; Kotrova, M; Appelt, F; Stewart, P; Bystry, V; Krejci, A; Grioni, A; Pal, K; Stranska, K; Plevova, K; Rijntjes, J; Songia, S; Svaton, M; Fronkova, E; Bartram, J; Scheijen, B; Herrmann, D; Garcia-Sanz, R; Hancock, J; Moppett, J; van Dongen, JJM; Cazzaniga, G; Davi, F; Groenen, PJTA; Hummel, M; Macintyre, EA; Stamatopoulos, K; Trka, J; Langerak, AW; Gonzalez, D; Pott, C; Bruggemann, M; Darzentas, N, 2019: Quality control and quantification in IG/TR next-generation sequencing marker identification: protocols and bioinformatic functionalities by EuroClonality-NGS. LEUKEMIA 33(9), p. 2254 - 2265, doi: 10.1038/s41375-019-0499-4
• Scheijen, B; Meijers, RWJ; Rijntjes, J; van der Klift, MY; Mobs, M; Steinhilber, J; Reigl, T; van den Brand, M; Kotrova, M; Ritter, JM; Catherwood, MA; Stamatopoulos, K; Bruggemann, M; Davi, F; Darzentas, N; Pott, C; Fend, F; Hummel, M; Langerak, AW; Groenen, PJTA, 2019: Next-generation sequencing of immunoglobulin gene rearrangements for clonality assessment: a technical feasibility study by EuroClonality-NGS. LEUKEMIA 33(9), p. 2227 - 2240, doi: 10.1038/s41375-019-0508-7
• Taus, P; Plevova, K; Darzentas, N; Pal, K; Pospisilova, S, 2019: Identification of novel chronic lymphocytic leukemia subtypes using pathway mutation scores and consensus clustering. EUROPEAN JOURNAL OF HUMAN GENETICS 27, p. 1553 - 1554
• Hwang, MH; Darzentas, N; Bienzle, D; Moore, PF; Guscetti, F; Morrison, J; Keller, SM, 2019: A review of canine B cell clonality assays and primer set optimization using large-scale repertoire data. VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY 209, p. 45 - 52, doi: 10.1016/j.vetimm.2019.01.002

2018

• Baliakas, P.; Mattsson, M.; Hadzidimitriou, A.; Minga, E.; Agathangelidis, A.; Sutton, L.; Scarfo, L.; Davis, Z.; Yan, X.; Plevova, K.; Sandberg, Y.; Vojdeman, F. J.; Tzenou, T.; Chu, C. C.; Veronese, S.; Mansouri, L.; Smedby, K. E.; Giudicelli, V.; Nguyen-Khac, F.; Panagiotidis, P.; Juliusson, G.; Anagnostopoulos, A.; Lefranc, M.; Trentin, L.; Catherwood, M.; Montillo, M.; Niemann, C. U.; Langerak, A. W.; Pospisilova, S.; Stavroyianni, N.; Chiorazzi, N.; Oscier, D.; Jelinek, D. F.; Shanafelt, T.; Darzentas, N.; Belessi, C.; Davi, F.; Ghia, P.; Rosenquist, R.; Stamatopoulos, K., 2018: No improvement in long-term survival over time for chronic lymphocytic leukemia patients in stereotyped subsets #1 and #2 treated with chemo(immuno)therapy. HAEMATOLOGICA , doi: 10.3324/haematol.2017.182634
• Kotrova, M; Knecht, H; Herrmann, D; Schwarz, M; Olsen, K; Trautmann, H; Goekbuget, N; Pott, C; Darzentas, N; Bruggemann, M, 2018: The IG/TR Next Generation Marker Screening Developed within Euroclonality-NGS Consortium Is Successful in 94% of Acute Lymphoblastic Leukemia Samples. BLOOD 132, doi: 10.1182/blood-2018-99-112828
• Kotrova, M; Szczepanowski, M; Knecht, H; Faul, C; Kondakci, M; Steffen, B; Viardot, A; Kneba, M; Hoelzer, D; Goekbuget, N; Darzentas, N; Bruggemann, M, 2018: Monitoring of the Clonal Architecture of B-Cell Precursor ALL during Induction Chemoimmunotherapy. BLOOD 132, doi: 10.1182/blood-2018-99-112844
• Hwang, MH; Darzentas, N; Bienzle, D; Moore, PF; Morrison, J; Keller, SM, 2018: Characterization of the canine immunoglobulin heavy chain repertoire by next generation sequencing. VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY 202, p. 181 - 190, doi: 10.1016/j.vetimm.2018.07.002

2017

• Knecht, H; Kotrova, M; Reigl, T; Krejci, A; Herrmann, D; Schwarz, M; Bystry, V; Darzentas, N; Bruggemann, M, 2017: T-CELL RECEPTOR. REPERTOIRE CHARACTERISTICS IN RELAPSED/REFRACTORY B-CELL PRECURSOR ACUTE LYMPHOBLASTIC LEUKEMIA ON BLINATUMOMAB TREATMENT. HAEMATOLOGICA 102, p. 329 - 330
• Roy, A; Bystry, V; Bohn, G; Goudevenou, K; Reigl, T; Papaioannou, M; Krejci, A; O´Byrne, S; Chaidos, A; Grioni, A; Darzentas, N; Roberts, IAG; Karadimitris, A, 2017: High resolution IgH repertoire analysis reveals fetal liver as the likely origin of life-long, innate B lymphopoiesis in humans. CLINICAL IMMUNOLOGY 183, p. 8 - 16, doi: 10.1016/j.clim.2017.06.005
• Rosenquist, R; Ghia, P; Hadzidimitriou, A; Sutton, L A; Agathangelidis, A; Baliakas, P; Darzentas, N; Giudicelli, V; Lefranc M. P; Langerak, A W; Belessi, C; Davi F; Stamatopoulos, K, 2017: Immunoglobulin gene sequence analysis in chronic lymphocytic leukemia: Updated eric recommendations. LEUKEMIA , doi: 10.1038/leu.2017.125
• Bystry, V.; Reigl, T; Krejci, A; Demko, M; Hanakova, B; Grioni, A; Knecht, H; Schlitt, M.; Dreger, P; Sellner, L;Herrmann, D; Pingeon, M; Boudjoghra, M; Rijntjes, J; Pott, C; Langerak, A W; Groenen P. J; Davi, F; Brüggemann, M; Darzentas, N, 2017: ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data. 33(3), p. 435 - 437
• Pal, K; Bystry, V; Reigl, T; Demko, M; Krejci, A; Touloumenidou, T; Stalika, E; Tichy, B; Ghia, P; Stamatopoulos, K; Pospisilova, S; Malcikova, J; Darzentas, N, 2017: GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data. BIOINFORMATICS 33(23), p. 3802 - 3804, doi: 10.1093/bioinformatics/btx423
• Langerak, AW; Brueggemann, M; Davi, F; Darzentas, N; van Dongen, JJM; Gonzalez, D; Cazzaniga, G; Giudicelli, V; Lefranc, MP; Giraud, M; Macintyre, EA; Hummel, M; Pott, C; Groenen, PJTA; Stamatopoulos, K, 2017: High-Throughput Immunogenetics for Clinical and Research Applications in Immunohematology: Potential and Challenges. JOURNAL OF IMMUNOLOGY 198(10), p. 3765 - 3774, doi: 10.4049/jimmunol.1602050
• Sellner, L; Bruggemann, M; Schlitt, M; Knecht, H; Herrmann, D; Reigl, T; Krejci, A; Bystry, V; Darzentas, N; Rieger, M; Dietrich, S; Luft, T; Ho, AD; Kneba, M; Dreger, P, 2017: GvL effects in T-prolymphocytic leukemia: evidence from MRD kinetics and TCR repertoire analyses. BONE MARROW TRANSPLANTATION 52(4), p. 544 - 551, doi: 10.1038/bmt.2016.305
• Bousios, A; Gaut, BS; Darzentas, N, 2017: Considerations and complications of mapping small RNA high-throughput data to transposable elements. MOBILE DNA 8, doi: 10.1186/s13100-017-0086-z

2016

• Sellner, L; Bruggemann, M; Schlitt, M; Knecht, H; Herrmann, D; Reigl, T; Krejci, A; Bystry, V; Darzentas, N; Rieger, M; Dietrich, S; Zenz, T; Ho, AD; Kneba, M; Dreger, P, 2016: Graft-versus-leukemia effects in T-prolymphocytic leukemia: evidence from MRD kinetics and TCR repertoire analyses. BONE MARROW TRANSPLANTATION 51, p. S68 - S69
• Bousios, A; Diez, CM; Takuno, S; Bystry, V; Darzentas, N; Gaut, BS, 2016: A role for palindromic structures in the cis-region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response. GENOME RESEARCH 26(2), p. 226 - 237, doi: 10.1101/gr.193763.115
• Grioni, A; Fazio, G; Reigl, T; Rigamonti, S; Bystry, V; Songia, S; Biondi, A; Darzentas, N; Cazzaniga, G, 2016: A PLATFORM FOR DETECTION OF FUSION GENES IN ALL FROM TARGET CAPTURE NEXT- GENERATION SEQUENCING OF DNA AND RNA. HAEMATOLOGICA 101, p. 26 - 27
• Bikos, V; Karypidou, M; Stalika, E; Baliakas, P; Xochelli, A; Sutton, LA; Papadopoulos, G; Agathangelidis, A; Papadopoulou, E; Davis, Z; Algara, P; Kanellis, G; Traverse-Glehen, A; Mollejo, M; Anagnostopoulos, A; Ponzoni, M; Gonzalez, D; Pospisilova, S; Matutes, E; Piris, MA; Papadaki, T; Ghia, P; Rosenquist, R; Oscier, D; Darzentas, N; Tzovaras, D; Belessi, C; Hadzidimitriou, A; Stamatopoulos, K, 2016: An Immunogenetic Signature of Ongoing Antigen Interactions in Splenic Marginal Zone Lymphoma Expressing IGHV1-2*04 Receptors. CLINICAL CANCER RESEARCH 22(8), p. 2032 - 2040, doi: 10.1158/1078-0432.CCR-15-1170
• Baliakas, P; Mattsson, M; Hadzidimitriou, A; Minga, E; Agathangelidis, A; Sutton, LA; Scarfo, L; Davis, Z; Yan, XJ; Plevova, K; Sandberg, Y; Vojdeman, FJ; Tzenou, T; Chu, CC; Veroneze, S; Mansouri, L; Smedby, KE; Giudicelli, V; Nguyen-Khac, F; Panagiotidis, P; Juliusson, G; Anagnostopoulos, A; Lefranc, MP; Trentin, L; Catherwood, M; Montillo, M; Niemann, CU; Langerak, AW; Pospisilova, S; Stavroyianni, N; Chiorazzi, N; Oscier, D; Jelinek, DF; Shanafelt, T; Darzentas, N; Belessi, C; Davi, F; Ghia, P; Rosenquist, R; Stamatopoulos, K, 2016: NO IMPROVEMENT IN LONG-TERM OVERALL SURVIVAL AFTER THE INTRODUCTION OF CHEMO(IMMUNO)THERAPY FOR CHRONIC LYMPHOCYTIC LEUKEMIA PATIENTS BELONGING TO STEREOTYPED SUBSET #2. HAEMATOLOGICA 101, p. 231 - 231
• Sellner, L; Bruggemann, M; Schlitt, M; Knecht, H; Herrmann, D; Reigl, T; Krejci, A; Bystry, V; Darzentas, N; Rieger, M; Dietrich, S; Zenz, T; Ho, AD; Kneba, M; Dreger, P, 2016: Graft-versus-leukemia effects in T-prolymphocytic leukemia: evidence from minimal residual disease kinetics and T cell receptor repertoire analyses. ONCOLOGY RESEARCH AND TREATMENT 39, p. 78 - 78

2015

• Agathangelidis, A; Bystry, V; Hadzidimitriou, A; Sutton, LA; Minga, E; Kienle, D; Davis, Z; Yan, XJ; Shanafelt, T; Boudjogra, M; Plevova, K; Gounari, M; Xochelli, A; Navarro, A; Chatzouli, M; Pedersen, LB; Baliakas, P; Scarfo, L; Rossi, D; Veronese, S; Facco, M; Bikos, V; Karan-Djurasevic, T; Pavlovic, S; Mansouri, L; Poiron, C; Chu, CC; Stalika, E; Giudicelli, V; Panagiotidis, P; Sudarikov, A; Anagnostopoulos, A; Trentin, L; Catherwood, M; Montillo, M; Gaidano, G; Campo, E; Geisler, CH; Langerak, AW; Pospisilova, S; Lefranc, MP; Chiorazzi, N; Oscier, D; Jelinek, DF; Stilgenbauer, S; Belessi, C; Davi, F; Rosenquist, R; Ghia, P; Darzentas, N; Stamatopoulos, K, 2015: HIGHER-ORDER IMMUNOGLOBULIN SEQUENCE RELATIONS FOR MAJOR SUBSETS OF CHRONIC LYMPHOCYTIC LEUKEMIA: UNIQUENESS VERSUS EQUIVALENCE. HAEMATOLOGICA 100, p. 47 - 48
• Bruggermann, M; Knecht, H; Bartram, J; Bystry, V; Cazzaniga, G; Fazio, G; Ferrero, S; Fronkova, E; Garcia-Sanz, R; Grioni, A; Hancock, J; Jiminez, C; Kotrova, M; Ladetto, M; Moppett, J; Songia, S; Trka, J; Langerak, AW; Darzentas, N; Herrmann, D; Pott, C, 2015: INTERNATIONAL MULTI-LABORATORY NEXT-GENERATION SEQUENCING FOR MRD ANALYSIS IN ALL. A PILOT STUDY BY THE EUROCLONALITY-NGS CONSORTIUM. HAEMATOLOGICA 100, p. 31 - 31
• Sellner, L; Dreger, P; Schlitt, M; Knecht, H; Herrmann, D; Reigl, T; Krejci, A; Bystry, V; Darzentas, N; Rieger, M; Dietrich, S; Zenz, T; Ho, AD; Kneba, M; Brueggemann, M, 2015: T-Prolymphocytic Leukemia Is Sensitive to Polyclonal T Cell-Derived Graft-Versus-Leukemia Effects: Evidence from Minimal Residual Disease Kinetics and TCR Repertoire Diversity Analyses. BLOOD 126(23)
• Kotrova, M; Knecht, H; Bartram, J; Bystry, V; Cazzaniga, G; Fazio, G; Ferrero, S; Genuardi, E; Garcia-Sanz, R; Grioni, A; Hancock, J; Jiminez, C; Ladetto, M; Moppett, J; Songia, S; Herrmann, D; Pott, C; Langerak, AW; Darzentas, N; Trka, J; Fronkova, E; Bruggemann, M, 2015: Library Preparation Is the Major Factor Affecting Differences in Results of Immunoglobulin Gene Rearrangements Detection on Two Major Next-Generation Sequencing Platforms. BLOOD 126(23)
• Bystry, V; Agathangelidis, A; Bikos, V; Sutton, LA; Baliakas, P; Hadzidimitriou, A; Stamatopoulos, K; Darzentas, N, 2015: ARResT/AssignSubsets: a novel application for robust subclassification of chronic lymphocytic leukemia based on B cell receptor IG stereotypy. BIOINFORMATICS 31(23), p. 3844 - 3846, doi: 10.1093/bioinformatics/btv456
• Baliakas, P; Agathangelidis, A; Hadzidimitriou, A; Sutton, LA; Minga, E; Tsanousa, A; Scarfo, L; Davis, Z; Yan, XJ; Shanafelt, T; Plevova, K; Sandberg, Y; Vojdeman, FJ; Boudjogra, M; Tzenou, T; Chatzouli, M; Chu, CC; Veronese, S; Gardiner, A; Mansouri, L; Smedby, KE; Pedersen, LB; Moreno, D; Van Lom, K; Giudicelli, V; Francova, HS; Nguyen-Khac, F; Panagiotidis, P; Juliusson, G; Angelis, L; Anagnostopoulos, A; Lefranc, MP; Facco, M; Trentin, L; Catherwood, M; Montillo, M; Geisler, CH; Langerak, AW; Pospisilova, S; Chiorazzi, N; Oscier, D; Jelinek, DF; Darzentas, N; Belessi, C; Davi, F; Ghia, P; Rosenquist, R; Stamatopoulos, K, 2015: Not all IGHV3-21 chronic lymphocytic leukemias are equal: prognostic considerations. BLOOD 125(5), p. 856 - 859, doi: 10.1182/blood-2014-09-600874
• Xochelli, A; Agathangelidis, A; Kavakiotis, I; Minga, E; Sutton, L; Baliakas, P; Chouvarda, I; Giudicelli, V; Vlahavas, I; Maglaveras, N; Bonello, L; Trentin, L; Tedeschi, A; Panagiotidis, P; Geisler, C; Langerak, A; Pospisilova, S; Jelinek, D; Oscier, D; Chiorazzi, N; Darzentas, N; Davi, F; Ghia, P; Rosenquist, R; Hadzidimitriou, A; Belessi, C; Lefranc, MP; Stamatopoulos, K, 2015: Immunoglobulin heavy variable (IGHV) genes and alleles: new entities, new names and implications for research and prognostication in chronic lymphocytic leukaemia. IMMUNOGENETICS 67(1), p. 61 - 66, doi: 10.1007/s00251-014-0812-3

2014

• Xochelli, A; Kavakiotis, I; Agathangelidis, A; Kienle, D; Davis, Z; Yan, XJ; Shanafelt, T; Boudjogra, M; Plevova, K; Chatzouli, M; Pedersen, LB; Veronese, S; Facco, M; Moreno, D; Chu, CC; Giudicelli, V; Panagiotidis, P; Vlahavas, I; Anagnostopoulos, A; Maglaveras, N; Trentin, L; Catherwood, M; Montillo, M; Geisler, CH; Langerak, AW; Pospisilova, S; Lefranc, MP; Chiorazzi, N; Oscier, D; Jelinek, DF; Stilgenbauer, S; Belessi, C; Ghia, P; Davi, F; Rosenquist, R; Darzentas, N; Chouvarda, I; Sutton, LA; Hadzidimitriou, A; Stamatopoulos, K, 2014: Charting Unique Signatures of Somatic Hypermutation Amongst Chronic Lymphocytic Leukemia Patients Expressing IGHV4-34 Clonotypic B Cell Receptors. BLOOD 124(21)
• Baliakas, P; Hadzidimitriou, A; Sutton, LA; Minga, E; Agathangelidis, A; Tsanousa, A; Scarfo, L; Davis, Z; Yan, J; Shanafelt, TD; Plevova, K; Sandberg, Y; Vojdeman, FJ; Boudjoghra, M; Tzenou, T; Chatzouli, M; Chu, CC; Veronese, S; Gardiner, AC; Mansouri, L; Smedby, KE; Pedersen, L; Moreno, D; van Lom, K; Giudicelli, V; Francova, H; Nguyen-Khac, F; Panagiotidis, P; Juliusson, G; Angelis, L; Anagnostopoulos, A; Lefranc, MP; Facco, M; Trentin, L; Catherwood, M; Montillo, M; Geisler, CH; Langerak, AW; Pospisilova, S; Chiorazzi, N; Oscier, D; Jelinek, DF; Darzentas, N; Belessi, C; Davi, F; Rosenquist, R; Ghia, P; Stamatopoulos, K, 2014: Clinical Impact of Stereotyped Antigen Receptors in Chronic Lymphocytic Leukemia. BLOOD 124(21)
• Baliakas, P; Hadzidimitriou, A; Sutton, LA; Minga, E; Agathangelidis, A; Nichelatti, M; Tsanousa, A; Scarfo, L; Davis, Z; Yan, XJ; Shanafelt, T; Plevova, K; Sandberg, Y; Vojdeman, FJ; Boudjogra, M; Tzenou, T; Chatzouli, M; Chu, CC; Veronese, S; Gardiner, A; Mansouri, L; Smedby, KE; Pedersen, LB; Van Lom, K; Giudicelli, V; Francova, HS; Nguyen-Khac, F; Panagiotidis, P; Juliusson, G; Angelis, L; Anagnostopoulos, A; Lefranc, MP; Facco, M; Trentin, L; Catherwood, M; Montillo, M; Geisler, CH; Langerak, AW; Pospisilova, S; Chiorazzi, N; Oscier, D; Jelinek, DF; Darzentas, N; Belessi, C; Davi, F; Rosenquist, R; Ghia, P; Stamatopoulos, K, 2014: Clinical effect of stereotyped B-cell receptor immunoglobulins in chronic lymphocytic leukaemia: a retrospective multicentre study. LANCET HAEMATOLOGY 1(2), p. E74 - E84
• Vardi, A; Agathangelidis, A; Sutton, LA; Chatzouli, M; Scarfo, L; Mansouri, L; Douka, V; Anagnostopoulos, A; Darzentas, N; Rosenquist, R; Ghia, P; Belessi, C; Stamatopoulos, K, 2014: IgG-Switched CLL Has a Distinct Immunogenetic Signature from the Common MD Variant: Ontogenetic Implications. CLINICAL CANCER RESEARCH 20(2), p. 323 - 330, doi: 10.1158/1078-0432.CCR-13-1993
• Xochelli, A; Agathangelidis, A; Kavakiotis, I; Minga, E; Sutton, LA; Baliakas, P; Chouvarda, I; Giudicelli, V; Vlahavas, I; Maglaveras, N; Bonello, L; Trentin, L; Montillo, M; Panagiotidis, P; Geisler, C; Langerak, AW; Pospisilova, S; Jelinek, DF; Oscier,, 2014: IMMUNOGLOBULIN HEAVY VARIABLE GENES AND ALLELES: NEW ENTITIES, NEW NAMES AND IMPLICATIONS FOR RESEARCH AND PROGNOSTICATION IN CLL. HAEMATOLOGICA 99, p. 49 - 49
• Baliakas, P; Hadzidimitriou, A; Sutton, LA; Minga, E; Agathangelidis, A; Tsanousa, A; Scarfo, L; Davis, Z; Yan, XJ; Shanafelt, T; Plevova, K; Sandberg, Y; Vojdeman, FJ; Boudjogra, M; Tzenou, T; Chatzouli, M; Chu, CC; Veronese, S; Gardiner, A; Mansouri, L;, 2014: NOT ALL IGHV3-21 CLL ARE EQUAL: SUBSET #2 DISPLAYS A DISTINCTIVE CLINICOBIOLOGICAL PROFILE WITH REMARKABLE SIMILARITIES TO SUBSET #169, ITS CLOSE IMMUNOGENETIC RELATIVE. HAEMATOLOGICA 99, p. 48 - 49

2013

• Bousios, A; Darzentas, N, 2013: Sirevirus LTR retrotransposons: phylogenetic misconceptions in the plant world. MOBILE DNA 4, p. 1 - 7, doi: 10.1186/1759-8753-4-9
• Darzentas, N; Stamatopoulos, K, 2013: The Significance of Stereotyped B-Cell Receptors in Chronic Lymphocytic Leukemia. HEMATOLOGY-ONCOLOGY CLINICS OF NORTH AMERICA 27(2), p. 237 - +, doi: 10.1016/j.hoc.2012.12.001
• Sutton, LA; Kostareli, E; Stalika, E; Tsaftaris, A; Anagnostopoulos, A; Darzentas, N; Rosenquist, R; Stamatopoulos, K, 2013: Temporal Dynamics of Clonal Evolution in Chronic Lymphocytic Leukemia with Stereotyped IGHV4-34/IGKV2-30 Antigen Receptors: Longitudinal Immunogenetic Evidence. MOLECULAR MEDICINE 19, p. 230 - 236, doi: 10.2119/molmed.2013.00042
• Darzentas, N; Stamatopoulos, K., 2013: Stereotyped B cell receptors in B cell leukemias and lymphomas. METHODS MOL BIOL , p. 135 - 148
• Sutton, LA; Agathangelidis, A; Belessi, C; Darzentas, N; Davi, F; Ghia, P; Rosenquist, R; Stamatopoulos, K, 2013: Antigen selection in B-cell lymphomas-Tracing the evidence. SEMINARS IN CANCER BIOLOGY 23(6), p. 399 - 409, doi: 10.1016/j.semcancer.2013.07.006

2012

• Bikos, V; Stalika, E; Baliakas, P; Darzentas, N; Davis, Z; Traverse-Glehen, A; Dagklis, A; Kanellis, G; Anagnostopoulos, A; Tsaftaris, A; Ponzoni, M; Berger, F; Felman, P; Ghia, P; Papadaki, T; Oscier, D; Belessi, C; Stamatopoulos, K, 2012: Selection of antigen receptors in splenic marginal-zone lymphoma: further support from the analysis of the immunoglobulin light-chain gene repertoire. LEUKEMIA 26(12), p. 2567 - 2569, doi: 10.1038/leu.2012.207
• Bikos, V; Stalika, E; Karypidou, M; Baliakas, P; Davis, Z; Algara, P; Kanellis, G; Dagklis, A; Traverse-Glehen, A; Hockley, S; Mollejo, M; Tsaftaris, A; Anagnostopoulos, A; Ponzoni, M; Berger, F; Felman, P; Gonzalez, D; Matutes, E; Piris, MA; Papadaki, T; Ghia, P; Oscier, D; Belessi, C; Darzentas, N; Stamatopoulos, K, 2012: Clonal Selection in the Ontogeny and Evolution of Splenic Marginal Zone Lymphoma Confirming the Existence of Distinct Molecular Subtypes. BLOOD 120(21)
• Bousios, A; Minga, E; Kalitsou, N; Pantermali, M; Tsaballa, A; Darzentas, N, 2012: MASiVEdb: the Sirevirus Plant Retrotransposon Database. BMC GENOMICS 13, doi: 10.1186/1471-2164-13-158
• Bikos, V; Darzentas, N; Hadzidimitriou, A; Davis, Z; Hockley, S; Traverse-Glehen, A; Algara, P; Santoro, A; Gonzalez, D; Mollejo, M; Dagklis, A; Gangemi, F; Bosler, DS; Bourikas, G; Anagnostopoulos, A; Tsaftaris, A; Iannitto, E; Ponzoni, M; Felman, P; Ber, 2012: Over 30% of patients with splenic marginal zone lymphoma express the same immunoglobulin heavy variable gene: ontogenetic implications. LEUKEMIA 26(7), p. 1638 - 1646, doi: 10.1038/leu.2012.3
• Navarro, A; Clot, G; Royo, C; Jares, P; Hadzidimitriou, A; Agathangelidis, A; Bikos, V; Darzentas, N; Papadaki, T; Salaverria, I; Pinyol, M; Puig, X; Palomero, J; Vegliante, MC; Amador, V; Martinez-Trillos, A; Stefancikova, L; Wiestner, A; Wilson, W; Pott, 2012: Molecular Subsets of Mantle Cell Lymphoma Defined by the IGHV Mutational Status and SOX11 Expression Have Distinct Biologic and Clinical Features. CANCER RESEARCH 72(20), p. 5307 - 5316, doi: 10.1158/0008-5472.CAN-12-1615
• Ganopoulos, I; Madesis, P; Darzentas, N; Argiriou, A; Tsaftaris, A, 2012: Barcode High Resolution Melting (Bar-HRM) analysis for detection and quantification of PDO ´Fava Santorinis´ (Lathyrus clymenum) adulterants. FOOD CHEMISTRY 133(2), p. 505 - 512, doi: 10.1016/j.foodchem.2012.01.015
• Bousios, A; Kourmpetis, YAI; Pavlidis, P; Minga, E; Tsaftaris, A; Darzentas, N, 2012: The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story. PLANT JOURNAL 69(3), p. 475 - 488, doi: 10.1111/j.1365-313X.2011.04806.x
• Kostareli, E; Gounari, M; Janus, A; Murray, F; Brochet, X; Giudicelli, V; Pospisilova, S; Oscier, D; Foroni, L; di Celle, PF; Tichy, B; Pedersen, LB; Jurlander, J; Ponzoni, M; Kouvatsi, A; Anagnostopoulos, A; Thompson, K; Darzentas, N; Lefranc, MP; Beless, 2012: Antigen receptor stereotypy across B-cell lymphoproliferations: the case of IGHV4-59/IGKV3-20 receptors with rheumatoid factor activity. LEUKEMIA 26(5), p. 1127 - 1131, doi: 10.1038/leu.2011.311

2011

• van der Fits, L; Sandberg, Y; Darzentas, N; Zoutman, WH; Tielemans, D; Wolvers-Tettero, ILM; Vermeer, MH; Langerak, AW, 2011: A restricted clonal T-cell receptor alpha beta repertoire in Sezary syndrome is indicative of superantigenic stimulation. BRITISH JOURNAL OF DERMATOLOGY 165(1), p. 78 - 84, doi: 10.1111/j.1365-2133.2011.10308.x
• Tani, E; Tsaballa, A; Stedel, C; Kalloniati, C; Papaefthimiou, D; Polidoros, A; Darzentas, N; Ganopoulos, I; Flemetakis, E; Katinakis, P; Tsaftaris, A, 2011: The study of a SPATULA-like bHLH transcription factor expressed during peach (Prunus persica) fruit development. PLANT PHYSIOLOGY AND BIOCHEMISTRY 49(6), p. 654 - 663, doi: 10.1016/j.plaphy.2011.01.020
• Tsaftaris, A; Pasentsis, K; Makris, A; Darzentas, N; Policloros, A; Kalivas, A; Argiriou, A, 2011: The study of the E-class SEPALLATA3-like MADS-box genes in wild-type and mutant flowers of cultivated saffron crocus (Crocus sativus L.) and its putative progenitors. JOURNAL OF PLANT PHYSIOLOGY 168(14), p. 1675 - 1684, doi: 10.1016/.j.jplph.2011.03.015
• Tsaballa, A; Pasentsis, K; Darzentas, N; Tsaftaris, AS, 2011: Multiple evidence for the role of an Ovate-like gene in determining fruit shape in pepper. BMC PLANT BIOLOGY 11, doi: 10.1186/1471-2229-11-46
• Theodosiou, T; Vizirianakis, IS; Angelis, L; Tsaftaris, A; Darzentas, N, 2011: MeSHy: Mining unanticipated PubMed information using frequencies of occurrences and concurrences of MeSH terms. JOURNAL OF BIOMEDICAL INFORMATICS 44(6), p. 919 - 926, doi: 10.1016/j.jbi.2011.05.009
• Hadzidimitriou, A; Agathangelidis, A; Darzentas, N; Murray, F; Delfau-Larue, MH; Pedersen, LB; Lopez, AN; Dagklis, A; Rombout, P; Beldjord, K; Kolstad, A; Dreyling, MH; Anagnostopoulos, A; Tsaftaris, A; Mavragani-Tsipidou, P; Rosenwald, A; Ponzoni, M; Gro, 2011: Is there a role for antigen selection in mantle cell lymphoma? Immunogenetic support from a series of 807 cases. BLOOD 118(11), p. 3088 - 3095, doi: 10.1182/blood-2011-03-343434

2010

• Bousios, A; Darzentas, N; Tsaftaris, A; Pearce, SR, 2010: Highly conserved motifs in non-coding regions of Sirevirus retrotransposons: the key for their pattern of distribution within and across plants?. BMC GENOMICS 11, doi: 10.1186/1471-2164-11-89
• Forconi, F; Potter, KN; Wheatley, I; Darzentas, N; Sozzi, E; Stamatopoulos, K; Mockridge, CI; Packham, G; Stevenson, FK, 2010: The normal IGHV1-69-derived B-cell repertoire contains stereotypic patterns characteristic of unmutated CLL. BLOOD 115(1), p. 71 - 77, doi: 10.1182/blood-2009-06-225813
• Darzentas, N; Bousios, A; Apostolidou, V; Tsaftaris, AS, 2010: MASiVE: Mapping and Analysis of SireVirus Elements in plant genome sequences. BIOINFORMATICS 26(19), p. 2452 - 2454, doi: 10.1093/bioinformatics/btq454
• Kostareli, E; Sutton, LA; Hadzidimitriou, A; Darzentas, N; Kouvatsi, A; Tsaftaris, A; Anagnostopoulos, A; Rosenquist, R; Stamatopoulos, K, 2010: Intraclonal diversification of immunoglobulin light chains in a subset of chronic lymphocytic leukemia alludes to antigen-driven clonal evolution. LEUKEMIA 24(7), p. 1317 - 1324, doi: 10.1038/leu.2010.90
• Darzentas, N, 2010: Circoletto: visualizing sequence similarity with Circos. BIOINFORMATICS 26(20), p. 2620 - 2621, doi: 10.1093/bioinformatics/btq484
• Darzentas, N; Hadzidimitriou, A; Murray, F; Hatzi, K; Josefsson, P; Laoutaris, N; Moreno, C; Anagnostopoulos, A; Jurlander, J; Tsaftaris, A; Chiorazzi, N; Belessi, C; Ghia, P; Rosenquist, R; Davi, F; Stamatopoulos, K, 2010: A different ontogenesis for chronic lymphocytic leukemia cases carrying stereotyped antigen receptors: molecular and computational evidence. LEUKEMIA 24(1), p. 125 - 132, doi: 10.1038/leu.2009.186

• Encyklopedie CLL podskupin: unikátní znalostní databáze vybavená bioinformatickými nástroji použitelná v personalizované biomedicíně a klinické praxi (16-34272A), Ministry of Health of the CR, 2016 - 2019