About event
We would like to invite you to a course organized by CELLIM Core Facility:
Processing and Analysis of Biological Images: Focus on Cell Tracking
Light microscopy is indispensable method in biological research. Microscopes are producing beautiful images from which meaningful information must be extracted. This online course is intended for biologists, who would like to learn how to obtain quantitative informations from microscopy images.
Course will cover basics of standard image processing methods and will be in more details focused on analysis of live cell imaging experiments, particularly objects tracking in time.
Different platforms will be presented, both open source and commercials.
The course is free of charge, but there is limited number of places.
Participants will be selected based on their background and motivation.
Program:
Wednesday; November 11, 2020
9:30 – 9:45 Milan Ešner
Introduction, Practical Information About the Course
9:45 – 10:45 Milan Ešner
Live Cell Acquisition Optimization
11:00 – 12:30 Michal Kozubek
Introduction to Image Processing and Object Tracking
13:30 – 14:30 Wojtek Jesionek
Image Processing with Cell Profiler
14:45 - 16:30 Martin Maška (FI)
Image Processing with ImageJ and Object tracking
Thursday; November 12, 2020
9:00 – 10:30 Daniel Reisen
Imaris Overview
10:45 – 13:00 Daniel Reisen
3D Rendering, 3D Segmentation
14:00-16:00 Daniel Reisen
Object Tracking and Cell Lineage Analysis
16:15 – 17:15 J.Y. Tinevez
Object Tracking with Trackmate I
17:30 18:30 J.Y. Tinevez
Object Tracking with Trackmate II
Friday; November 13, 2020
9:00 – 9:30 Soren Prag
ZEN Introduction
9:45 – 10:45 Chris Power/Soren Prag
Deconvolution in ZEN
11:00 – 11:45 Soren Prag
Image Analysis Using ZEN
13:00 – 13:45 Chris Power
Spectral Unmixing
14:00 – 14:30 Chris Power
Photo Manipulation
14:40 – 15:30 Soren Prag
APEER and Intellesis