Processing and Analysis of Biological Images: Focus on Cell Tracking

11. 11. - 13. 11. 2020

We would like to invite you to a course organized by CELLIM Core Facility:

Processing and Analysis of Biological Images: Focus on Cell Tracking

Light microscopy is indispensable method in biological research. Microscopes are producing beautiful images from which meaningful information must be extracted. This online course is intended for biologists, who would like to learn how to obtain quantitative informations from microscopy images.

Course will cover basics of standard image processing methods and will be in more details focused on analysis of live cell imaging experiments, particularly objects tracking in time.

Different platforms will be presented, both open source and commercials.

The course is free of charge, but there is limited number of places.

Participants will be selected based on their background and motivation.



Wednesday; November 11, 2020
9:30 – 9:45  Milan Ešner
Introduction, Practical Information About the Course

9:45 – 10:45  Milan Ešner
Live Cell Acquisition Optimization

11:00 – 12:30  Michal Kozubek
Introduction to Image Processing and Object Tracking

13:30 – 14:30  Wojtek Jesionek
Image Processing with Cell Profiler

14:45 - 16:30  Martin Maška (FI) 
Image Processing with ImageJ and Object tracking


Thursday; November 12, 2020
9:00 – 10:30  Daniel Reisen
Imaris Overview

10:45 – 13:00  Daniel Reisen
3D Rendering, 3D Segmentation

14:00-16:00  Daniel Reisen
Object Tracking and Cell Lineage Analysis

16:15 – 17:15  J.Y. Tinevez
Object Tracking with Trackmate I

17:30 18:30  J.Y. Tinevez
Object Tracking with Trackmate II

Friday; November 13, 2020
9:00 – 9:30  Soren Prag
ZEN Introduction

9:45 – 10:45  Chris Power/Soren Prag
Deconvolution in ZEN

11:00 – 11:45  Soren Prag
Image Analysis Using ZEN

13:00 – 13:45  Chris Power
Spectral Unmixing

14:00 – 14:30  Chris Power
Photo Manipulation

14:40 – 15:30  Soren Prag
APEER and Intellesis


Registration has been closed.