Selected publications

Publications that are part of the Web of Science database, possibly also other publications chosen by authors.

2021

• Gvarjaladze, D; Gulua, T; Gogichaishvili, S; Hritz, J; Metrevel, N, 2021: Quadruplex Priming Amplification at a Range of Human Body Temperature. BIOINTERFACE RESEARCH IN APPLIED CHEMISTRY 11(1), p. 7932 - 7942, doi: 10.33263/BRIAC111.79327942

2020

• Kuban, V; Macek, P; Hritz, J; Nechvatalova, K; Nedbalcova, K; Faldyna, M; Sebo, P; Zidek, L; Bumba, L, 2020: Structural Basis of Ca2+-Dependent Self-Processing Activity of Repeat-in-Toxin Proteins. MBIO 11(2), doi: 10.1128/mBio.00226-20
• Zapletal, V; Mladek, A; Melkova, K; Lousa, P; Nomilner, E; Jasenakova, Z; Kuban, V; Makovicka, M; Lanikova, A; Zidek, L; Hritz, J, 2020: Choice of Force Field for Proteins Containing Structured and Intrinsically Disordered Regions. BIOPHYSICAL JOURNAL 118(7), p. 1621 - 1633, doi: 10.1016/j.bpj.2020.02.019

2019

• Melkova, K; Zapletal, V; Narasimhan, S; Jansen, S; Hritz, J; Skrabana, R; Zweckstetter, M; Ringkjobing Jensen, M; Blackledge, M; Zidek, L, 2019: Structure and Functions of Microtubule Associated Proteins Tau and MAP2c: Similarities and Differences. BIOMOLECULES 9(3), doi: 10.3390/biom9030105
• Kuban, V; Srb, P; Stegnerova, H; Padrta, P; Zachrdla, M; Jasenakova, Z; Sanderova, H; Vitovska, D; Krasny, L; Koval, T; Dohnalek, J; Ziemska-Legiecka, J; Grynberg, M; Jarnot, P; Gruca, A; Jensen, MR; Blackledge, M; Zidek, L, 2019: Quantitative Conformational Analysis of Functionally Important Electrostatic Interactions in the Intrinsically Disordered Region of Delta Subunit of Bacterial RNA Polymerase. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 141(42), p. 16817 - 16828, doi: 10.1021/jacs.9b07837

2018

• Melkova, K; Zapletal, V; Jansen, S; Nomilner, E; Zachrdla, M; Hritz, J; Novacek, J; Zweckstetter, M; Jensen, MR; Blackledge, M; Zidek, L, 2018: Functionally specific binding regions of microtubule-associated protein 2c exhibit distinct conformations and dynamics. JOURNAL OF BIOLOGICAL CHEMISTRY 293(34), p. 13297 - 13309, doi: 10.1074/jbc.RA118.001769
• Spackova, N; Trosanova, Z; Sebesta, F; Jansen, S; Burda, JV; Srb, P; Zachrdla, M; Zidek, L; Kozelka, J, 2018: Protein environment affects the water-tryptophan binding mode. MD, QM/MM, and NMR studies of engrailed homeodomain mutants. PHYSICAL CHEMISTRY CHEMICAL PHYSICS 20(18), p. 12664 - 12677, doi: 10.1039/c7cp08623g

2017

• Zachrdla, M; Padrta, P; Rabatinova, A; Sanderova, H; Barvik, I; Krasny, L; Zidek, L, 2017: Solution structure of domain 1.1 of the sigma(A) factor from Bacillus subtilis is preformed for binding to the RNA polymerase core. JOURNAL OF BIOLOGICAL CHEMISTRY 292(28), p. 11610 - 11617, doi: 10.1074/jbc.M117.784074
• Srb, P; Novacek, J; Kaderavek, P; Rabatinova, A; Krasny, L; Zidkova, J; Bobalova, J; Sklenar, V; Zidek, L, 2017: Triple resonance NMR relaxation experiments for studies of intrinsically disordered proteins. JOURNAL OF BIOMOLECULAR NMR 69(3), p. 133 - 146, doi: 10.1007/s10858-017-0138-1
• Jansen, S; Melkova, K; Trosanova, Z; Hanakova, K; Zachrdla, M; Novacek, J; Zupa, E; Zdrahal, Z; Hritz, J; Zidek, L, 2017: Quantitative mapping of microtubule-associated protein 2c (MAP2c) phosphorylation and regulatory protein 14-3-3 zeta-binding sites reveals key differences between MAP2c and its homolog Tau. JOURNAL OF BIOLOGICAL CHEMISTRY 292(16), p. 6715 - 6727, doi: 10.1074/jbc.M116.771097
• Zapletal, V; Mladek, A; Hritz, J; Zidek, L, 2017: Computational characterization of hybrid proteins containing ordered and intrinsically disordered regions. FEBS JOURNAL 284, p. 321 - 321
• Zidek, L; Meirovitch, E, 2017: Conformational Entropy from Slowly Relaxing Local Structure Analysis of N-15-H Relaxation in Proteins: Application to Pheromone Binding to MUP-I in the 283-308 K Temperature Range. JOURNAL OF PHYSICAL CHEMISTRY B 121(37), p. 8684 - 8692, doi: 10.1021/acs.jpcb.7b06049
• Otrusinova, O; Demo, G; Padrta, P; Jasenakova, Z; Pekarova, B; Gelova, Z; Szmitkowska, A; Kaderavek, P; Jansen, S; Zachrdla, M; Klumpler, T; Marek, J; Hritz, J; Janda, L; Iwai, H; Wimmerova, M; Hejatko, J; Zidek, L, 2017: Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana. JOURNAL OF BIOLOGICAL CHEMISTRY 292(42), p. 17525 - 17540, doi: 10.1074/jbc.M117.790212
• Melkova, K; Jansen, S; Hritz, J; Zidek, L, 2017: NMR characterization of intrinsically disordered microtubule associated protein 2c. FEBS JOURNAL 284, p. 321 - 322

2016

• Kaderavek, P; Zapletal, V; Fiala, R; Srb, P; Padrta, P; Precechtelova, JP; Soltesova, M; Kowalewski, J; Widmalm, G; Chmelik, J; Sklenar, V; Zidek, L, 2016: Spectral density mapping at multiple magnetic fields suitable for C-13 NMR relaxation studies. JOURNAL OF MAGNETIC RESONANCE 266, p. 23 - 40, doi: 10.1016/j.jmr.2016.02.016
• Pekarova, B; Szmitkowska, A; Dopitova, R; Degtjarik, O; Zidek, L; Hejatko, J, 2016: Structural Aspects of Multistep Phosphorelay-Mediated Signaling in Plants. MOLECULAR PLANT 9(1), p. 71 - 85, doi: 10.1016/j.molp.2015.11.008
• Perczel, A; Atanasov, AG; Sklenar, V; Novacek, J; Papouskova, V; Kaderavek, P; Zidek, L; Kozlowski, H; Watly, J; Hecel, A; Kolkowska, P; Koca, J; Svobodova-Varekova, R; Pravda, L; Sehnal, D; Horsky, V; Geidl, S; Enriz, RD; Matejka, P; Jenistova, A; Dendisova, M; Kokaislova, A; Weissig, V; Olsen, M; Coffey, A; Ajuebor, J; Keary, R; Sanz-Gaitero, M; Raaij, MJ; McAuliffe, O; Waltenberger, B; Mocan, A; Smejkal, K; Heis, EH; Diederich, M; Musiol, R; Kosmrlj, J; Polanski, J; Jampilek, J, 2016: The Eighth Central European Conference ´´Chemistry towards Biology´´: Snapshot. MOLECULES 21(10), doi: 10.3390/molecules21101381

2015

• MacRaild, CA; Zachrdla, M; Andrew, D; Krishnarjuna, B; Novacek, J; Zidek, L; Sklenar, V; Richards, JS; Beeson, JG; Anders, RF; Norton, RS, 2015: Conformational Dynamics and Antigenicity in the Disordered Malaria Antigen Merozoite Surface Protein 2. PLOS ONE 10(3), doi: 10.1371/journal.pone.0119899
• Kaderavek, P; Grutsch, S; Salvi, N; Tollinger, M; Zidek, L; Bodenhausen, G; Ferrage, F, 2015: Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins. JOURNAL OF BIOMOLECULAR NMR 63(4), p. 353 - 365, doi: 10.1007/s10858-015-9994-8

2014

• Kaderavek, P; Zapletal, V; Rabatinova, A; Krasny, L; Sklenar, V; Zidek, L, 2014: Spectral density mapping protocols for analysis of molecular motions in disordered proteins. JOURNAL OF BIOMOLECULAR NMR 58(3), p. 193 - 207, doi: 10.1007/s10858-014-9816-4
• Obr, M; Hadravova, R; Dolezal, M; Krizova, I; Papouskov, V; Zidek, L; Hrabal, R; Ruml, T; Rumlova, M, 2014: Stabilization of the beta-hairpin in Mason-Pfizer monkey virus capsid protein- a critical step for infectivity. RETROVIROLOGY 11, doi: 10.1186/s12977-014-0094-8
• Vymetal, J; Bathula, SR; Cerny, J; Chaloupkova, R; Zidek, L; Sklenar, V; Vondrasek, J, 2014: Retro operation on the Trp-cage miniprotein sequence produces an unstructured molecule capable of folding similar to the original only upon 2,2,2-trifluoroethanol addition. PROTEIN ENGINEERING DESIGN & SELECTION 27(12), p. 463 - 472, doi: 10.1093/protein/gzu046

2013

• Papouskova, V; Novacek, J; Kaderavek, P; Sanderova, H; Rabatinova, A; Zidek, L; Krasny, L; Sklenar, V, 2013: Structural study of partially disordered delta subunit of RNA polymerase unique for gram-positive bacteria. FEBS JOURNAL 280, p. 146 - 147
• Papouskova, V; Kaderavek, P; Otrusinova, O; Rabatinova, A; Sanderova, H; Novacek, J; Krasny, L; Sklenar, V; Zidek, L, 2013: Structural Study of the Partially Disordered Full-Length delta Subunit of RNA Polymerase from Bacillus subtilis. CHEMBIOCHEM 14(14), p. 1772 - 1779, doi: 10.1002/cbic.201300226
• Rabatinova, A; Sanderova, H; Matejckova, JJ; Korelusova, J; Sojka, L; Barvik, I; Papouskova, V; Sklenar, V; Zidek, L; Krasny, L, 2013: The delta Subunit of RNA Polymerase Is Required for Rapid Changes in Gene Expression and Competitive Fitness of the Cell. JOURNAL OF BACTERIOLOGY 195(11), p. 2603 - 2611, doi: 10.1128/JB.00188-13
• Novacek, J; Janda, L; Dopitova, R; Zidek, L; Sklenar, V, 2013: Efficient protocol for backbone and side-chain assignments of large, intrinsically disordered proteins: transient secondary structure analysis of 49.2 kDa microtubule associated protein 2c. JOURNAL OF BIOMOLECULAR NMR 56(4), p. 291 - 301, doi: 10.1007/s10858-013-9761-7
• Nyarko, A; Song, YJ; Novacek, J; Zidek, L; Barbar, E, 2013: Multiple Recognition Motifs in Nucleoporin Nup159 Provide a Stable and Rigid Nup159-Dyn2 Assembly. JOURNAL OF BIOLOGICAL CHEMISTRY 288(4), p. 2614 - 2622, doi: 10.1074/jbc.M112.432831
• Haba, NY; Gross, R; Novacek, J; Shaked, H; Zidek, L; Barda-Saad, M; Chill, JH, 2013: NMR Determines Transient Structure and Dynamics in the Disordered C-Terminal Domain of WASp Interacting Protein. BIOPHYSICAL JOURNAL 105(2), p. 481 - 493, doi: 10.1016/j.bpj.2013.05.046

2012

• Novacek, J; Haba, NY; Chill, JH; Zidek, L; Sklenar, V, 2012: 4D Non-uniformly sampled HCBCACON and (1) J(NC alpha)-selective HCBCANCO experiments for the sequential assignment and chemical shift analysis of intrinsically disordered proteins. JOURNAL OF BIOMOLECULAR NMR 53(2), p. 139 - 148, doi: 10.1007/s10858-012-9631-8

2011

• Pekarova, B; Klumpler, T; Triskova, O; Horak, J; Jansen, S; Dopitova, R; Borkovcova, P; Papouskova, V; Nejedla, E; Sklenar, V; Marek, J; Zidek, L; Hejatko, J; Janda, L, 2011: Structure and binding specificity of the receiver domain of sensor histidine kinase CKI1 from Arabidopsis thaliana. PLANT JOURNAL 67(5), p. 827 - 839, doi: 10.1111/j.1365-313X.2011.04637.x
• Novacek, J; Zawadzka-Kazimierczuk, A; Papouskova, V; Zidek, L; Sanderova, H; Krasny, L; Kozminski, W; Sklenar, V, 2011: 5D C-13-detected experiments for backbone assignment of unstructured proteins with a very low signal dispersion. JOURNAL OF BIOMOLECULAR NMR 50(1), p. 1 - 11, doi: 10.1007/s10858-011-9496-2