Design principles of fusogenic proteins for lipid vesicles

Supervisor Prof. Robert Vácha, Ph.D.
Research Group Interaction Protein-Protein and Protein-Membrane

Cancer remains one of the leading causes of mortality worldwide, claiming nearly ten million lives each year. One promising treatment is cancer immunotherapy using mRNA encapsulated in lipid vesicles, which facilitate efficient drug transport into target cells. However, the delivery of mRNA into the cell remains a challenge due to limited endosomal escape. To overcome the endosomal escape barrier, this project aims to computationally design proteins that induce fusion between lipid vesicles and endosomes. Using mesoscopic simulations, we will identify the key structural features of proteins with a transmembrane domain that promote membrane fusion. These insights will inform the rational design of coiled-coil peptide sequences with said features and assess their capacity to induce membrane fusion using Martini coarse-grained simulations. This research will elucidate the molecular mechanism of protein-mediated membrane fusion, establishing a framework for the rational design of fusogenic proteins. The designed proteins will enable the development of lipid vesicles with increased endosomal escape efficiency, which has the potential to improve the intracellular delivery of mRNA. Collectively, these advances will contribute to the broader vision of developing clinically relevant platforms that expand the therapeutic potential of nucleic acid medicines and accelerate their translation into effective therapies.  

See list of topics
  1. Assembly and maturation of flaviviruses
  2. Cell entry and genome delivery of non-enveloped viruses
  3. Design principles of fusogenic proteins for lipid vesicles
  4. Development of advanced MRI techniques for functional brain mapping
  5. Frascan II: methods and applications
  6. How whole-genome triplication shaped desert adaptation in Brassiceae
  7. Integrating osteological and biomolecular evidence to investigate chromosomal aneuploidies in past populations
  8. Lipid nanoparticles in drug delivery
  9. Method development in palaeoproteomics
  10. Next-generation anticancer therapies based on metallodrugs
  11. One protein to rule them all: Decoding the multifunctionality of paramyxovirus matrix proteins
  12. Pushing the frontiers of magnetic resonance spectroscopy for biotechnology and materials engineering
  13. Regulation of drought stress memory and resilience in Brassica napus plants
  14. Retrogene evolution in Brassicaceae: The roles of genomic context and polyploid history
  15. RNA-associated mechanisms in Polycomb-mediated epigenetic silencing
  16. Tracing brain disease back to developmental decisions
  17. Translation Control