One protein to rule them all: Decoding the multifunctionality of paramyxovirus matrix proteins

Supervisor Dominik Hrebík, Ph.D.
Research Group Dominik Hrebík Research Group

How can a single viral structural protein perform radically different functions across an infected cell? Paramyxovirus matrix protein M is best known for driving virus assembly by linking the viral membrane to the nucleocapsid and ultimately forming a static lattice in the mature virus. Yet M also enters the nucleus and nucleolus, interacts with mitochondria, redirects host translation, binds the AP-3 adaptor complex, and cooperates with actin during viral budding. The molecular basis connecting these diverse activities remains unknown.

Using representative viruses from the family Paramyxoviridae, the successful candidate will combine whole-cell cryo-FIB-SEM, correlative microscopy, cryo-electron tomography, and subtomogram averaging to visualise M-associated changes in the nucleolus, mitochondria, ribosome organisation, viral factories, and budding sites.

Structural observations will be validated using high-resolution fluorescence microscopy, functional mutants, rescue experiments, and proteomics. In parallel, purified M will be reconstituted on defined membranes and with host factors to uncover the interactions that drive its structural transitions.

At the interface of structural virology, cell biology, and advanced cryo-imaging, this project offers an opportunity to uncover how viral proteins reorganise infected cells across scales – from molecular assemblies to whole-cell architecture – and to redefine M as a dynamic regulator of infection rather than a passive structural component.

See list of topics
  1. Assembly and maturation of flaviviruses
  2. Cell entry and genome delivery of non-enveloped viruses
  3. Design principles of fusogenic proteins for lipid vesicles
  4. Development of advanced MRI techniques for functional brain mapping
  5. Frascan II: methods and applications
  6. How whole-genome triplication shaped desert adaptation in Brassiceae
  7. Integrating osteological and biomolecular evidence to investigate chromosomal aneuploidies in past populations
  8. Lipid nanoparticles in drug delivery
  9. Method development in palaeoproteomics
  10. Next-generation anticancer therapies based on metallodrugs
  11. One protein to rule them all: Decoding the multifunctionality of paramyxovirus matrix proteins
  12. Pushing the frontiers of magnetic resonance spectroscopy for biotechnology and materials engineering
  13. Regulation of drought stress memory and resilience in Brassica napus plants
  14. Retrogene evolution in Brassicaceae: The roles of genomic context and polyploid history
  15. RNA-associated mechanisms in Polycomb-mediated epigenetic silencing
  16. Tracing brain disease back to developmental decisions
  17. Translation Control